High Content and Digital Pathology

Zeiss Axio Scan

Cost: £35 per hour
Location: CG06B – Back of room
Manual and SOP for Axioscan here Video here
Magnification: 2.5, 5, 10 x20 and x40
Fluorescent channels: DAPI, 488nm, 555 / 594, 647
Slide loader can hold up to 100 slides
Software: Zen
Images can be viewed offline using Zen Lite or QuPath
Analysis – QuPath Youtube channel for how to videos here

The Axioscan is booked through PPMS. For those new to the PPMS system, please read our user manual which covers brightfield and fluorescence scanning techniques

Nanozoomer XR

Cost: £25 per hour
Location: ECRC Level 1 – Pathology labs
Manual and SOP for nanozoomer here
Magnification: x20 and x40 (plus different zoom images)
Channels: Colourimetric (H and E, DAB etc)
Slide loader can hold up to 320 slides.
Images can be viewed offline using NDP viewer, download here.
Analysis – QuPath Youtube channel for how to videos here

The Nanozoomer is booked through PPMS. For those new to the PPMS system, please read our user manual which explains how to register and make bookings. Contact Helen Caldwell for training and/or support