Teaching

Upcoming Workshops

---

Workshops planned for 2022

Getting to grips with Imaris

Introduction to QuPath

Automation with ImageJ Macros

Introduction to bioimage analysis using Python

---

Past Workshops

Making Figures and Videos with Microscopy Data

Covering everything you need to display your data for meetings, reports and papers.

Introduction to BioImage Analysis using ImageJ/FIJI

A theoretical introduction to bioimage analysis using the ImageJ ecosystem, introducing fundamental image analysis concepts including the characteristics of image data, its processing and segmentation. This talk is aimed towards users new to bioimage analysis and will include a walkthrough of a typical image analysis workflow. Examples concentrate on fluorescence microscopy, but the techniques used are applicable to other types of images.

Introduction to Imaris

Hands-on Imaris workshop with a focus on analysis of 3D datasets.

Making Measurements in ImageJ/FIJI

Introduction to ImageJ/FIJI including ROIs

Introduction to CellProfiler

CellProfiler is an open-source image analysis software specialising in object segmentation and measurement. Processing steps are inserted as modules into workflow pipelines which can be run on batches of images with results collated into a single spreadsheet without any scripting involved. The workshop will cover adapting existing example pipelines as well how to construct a pipeline from scratch.

Introduction to writing ImageJ Macros

ImageJ macros can be used to automate repetitive tasks and are great for reproducibility. This workshop will demonstrate how to utilise facility macros and create a simple macro of your own workflow.

---