Dates and times will be decided soon for the below workshops. Check back here for more details.
Workshops planned for 2022
Getting to grips with Imaris
Introduction to QuPath
Automation with ImageJ Macros
Introduction to bioimage analysis using Python
Introduction to BioImage Analysis
Theoretical introduction to bioimage analysis and the software and resources available in the AIR. This talk is aimed towards users new to the facility. It is recommended that you attend this before other image analysis courses run by the AIR. It is usually run at least once a term.
Making Figures and Videos with Microscopy Data
Covering everything you need to display your data for meetings, reports and papers.
Introduction to BioImage Analysis using ImageJ/FIJI
A theoretical introduction to bioimage analysis using the ImageJ ecosystem, introducing fundamental image analysis concepts including the characteristics of image data, its processing and segmentation. This talk is aimed towards users new to bioimage analysis and will include a walkthrough of a typical image analysis workflow. Examples concentrate on fluorescence microscopy, but the techniques used are applicable to other types of images.
Introduction to Imaris
Hands-on Imaris workshop with a focus on analysis of 3D datasets.
Making Measurements in ImageJ/FIJI
Introduction to ImageJ/FIJI including ROIs
Introduction to CellProfiler
CellProfiler is an open-source image analysis software specialising in object segmentation and measurement. Processing steps are inserted as modules into workflow pipelines which can be run on batches of images with results collated into a single spreadsheet without any scripting involved. The workshop will cover adapting existing example pipelines as well how to construct a pipeline from scratch.
Introduction to writing ImageJ Macros
ImageJ macros can be used to automate repetitive tasks and are great for reproducibility. This workshop will demonstrate how to utilise facility macros and create a simple macro of your own workflow.