Ilastik is a free, open-source software developed by the Kreshuk lab which allows specialised segmentation and object classification using machine learning.

Facility Resources
  • We plan to create a general guide to using Ilastik as well including some example use cases which will go here when completed or as videos here.
  • More general information on image analysis concepts and terms, like pixel and object classification which Ilastik does, can be found here.
External resources
  • The Ilastik website includes a lot of user-documentation
  • Ilastik can be used in conjunction with FIJI. Read a guide about this here.
  • The CellProfiler lab have written about how to use Ilastik with CellProfiler, read this here.

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