The facility has 4 workstations dedicated to analysis of microscopy data. They cost £3 per hour to use for analysis of data collected at the IGC (contact us for external rates). Details of these workstations can be found in the table below.
As of November 2020, one of these workstations, Holycow, can be physically accessed in CG.06B but the other computers can only be used remotely. See this link for how to remote in and our manual for accessing Bioimage Analysis from home. Please remember to book your workstation on PPMS too.
Booking of the image analysis workstations is done on our booking system, PPMS. To find out more about PPMS, including account creation, check out the relevant section of our AIR Access page.
| Name | Location | Software | Good For.. |
|---|---|---|---|
| Wee Beastie | Remote access only | CellProfiler FIJI Huygens Imaris QuPath | Large data Light sheet reconstruction |
| Holycow | CG.06B | CellProfiler FIJI Imaris NIS-Elements (inc. SIM reconstruction and deconvolution) QuPath Volocity | Imaris SIM Reconstruction Volocity |
| Cleopatra | Remote access only | FIJI Imaris NIS-Elements (inc. deconvolution) QuPath Volocity | Deconvolution Volocity |
| Hullabaloo | Remote access only | Definiens FIJI Imaris NIS-Elements | Definiens |
The main image analysis workstation room is CG.03. If you are unsure about where this is then please see the Facility Map.
Click here to find out about more about the software installed on the workstations, including facility produced manuals and videos that will help you get started.
